Haplogroup K2b (Y-DNA)

Haplogroup K2b (P331)
Possible time of origin About 3,000 years younger than K-M9 40,000-50,000 years old
Possible place of origin Probably Southeast Asia[1] possibly South Asia if an extinction event took place.[1]
Ancestor K2 (also known as KxLT)
Descendants
  • K2b1 (previously known as MS) and;
  • Haplogroup P (K2b2; subclades include haplogroups Q and R).
Defining mutations P331, CTS2019/M1205, PF5990/L405, PF5969,[2][3]

Haplogroup K2b (P331), also known as MPS [2] is a human y-chromosome haplogroup that is thought to be less than 3,000 years younger than K, and less than 10,000 years younger than F, meaning it probably is around 50,000 years old, according to the age estimates of Tatiana Karafet et al. 2014.[1]

The basal paragroup K2b* has not been identified among living males or ancient remains. (One previously reported sample, dated at 3,000 years before present, has since been reclassified as R1a – an individual known as RISE94, from Viby in Sweden.)

K2b1 (P397/P399) known previously as Haplogroup MS, and Haplogroup P (P-P295), also known as K2b2 are the only primary clades of K2b. The population geneticist Tatiana Karafet and other researchers (2014) point out that K2b1, its subclades and P* are virtually restricted geographically to South East Asia and Oceania.[1] Whereas, in a striking contrast, P1 (P-M45) – the sole primary subclade of P* – and the primary clades Q and R, now make up: "the majority of paternal lineages in Europe, Central Asia and the Americas". According to Karafet et. al., the estimated dates for the branching of K, K2, K2b and P point to a "rapid diversification" within K2 "that likely occurred in Southeast Asia", with subsequent "westward expansions" of P*, P1, Q and R.[1]

Phylogenetic structure

Distribution

While basal K2b* has not yet been identified, populations with living members of the immediate subclades K2b1* and P* (K2b2) appear to be polarized between Oceania, South Asia and eastern Siberia.

Some Negrito populations of South-East Asia carry very high levels of K2b at the subclade level. It is carried, for instance, by more than 83% of males among the Aeta (or Agta) people of the Philippines, in the form of K2b1 (60%), P* (P-P295*, a.k.a. K2b2*) and P2.

K2b1

K2b1 is found in 83% of males of Papua New Guinea, and up to 60% in the Aeta people of the Philippines.[4] It is also found among other Melanesian populations, as well as indigenous Australians, and at lower levels amongst Polynesians.[4]

Major studies published in 2014 and 2015 suggest that about 27% of Aboriginal Australian males carry the subclade K2b1a1 (P60, P304, P308), which has also been referred to as "S-P308".[4][5] (The other Y-DNA haplogroups found in indigenous Australians included two distantly-related subclades of Haplogroup K2 at low levels: basal K2* [M526] and Haplogroup M1 [M4]), as well as C1b2b [M347; previous Haplogroup C4] and basal C* [M130].

Population K2b1
Papua New Guinea 82.76%
Maori 03.82% (1.95% of those sampled, i.e. 49% of Maori males were deemed to have non-indigenous Y-DNA)
Fiji 60.75%
Solomon Islands 71.9%
French Polynesia 08%
Vanuatu 76.5%
New Caledonia
Guam 33.3% (small sample size)
Samoa 08.04%
Kiribati 00% (small sample size)
Tonga 20.69%
Micronesia FDR 66.67%
Marshall Islands 63.64%
American Samoa
Northern Mariana Islands
Palau 61.5% (small sample size)
Cook Islands 03.9%
Wallis and Futuna 26%
Tuvalu 36%
Nauru 28.6% (small sample size)
Norfolk Island
Niue 00% (small sample size)
Tokelau 50% (small sample size)
Hawaii 20% (small sample size from FTDNA)
Aboriginal Australians 12% [5]
Timor 25%
Aeta 60%
Filipino Austronesian 04.0%
Malay 06.4%
Flores 35%
Sulawesi 11.3%
East Indonesia 25.9%
Java Indonesia 00%
Bali Indonesia 00.9%
Sumatra Indonesia 00%
Borneo Indonesia 05.8%
West Papua (Papua Province, Indonesia) 52.6%
West Papua (Papua Province, Indonesia) 82.6%
Sumba Indonesia 25.2%
Chukkese people Micronesia 76.5%
Pohnpeian people Micronesia 70% (small sample size)

P (K2b2)

P (K2b2) is widely distributed among males of Western European, Central Asian, and Native American ancestry.

Apart from the basal paragroup P*, it has only one subclade: P1 (M45), also known as K2b2a – which is also the parent of the major haplogroups Q (K2b2a1) and R (K2b2a2).

Basal P* (K2b2*)

P* (or "pre-P") is found among 28% of males among the Aeta, as well as in Timor at 10.8%, and one case may have been found in Papua New Guinea (Kaysar et al. 2006) although this has not been verified.[4]

Population P* %
Papua New Guinea 0.69 (assumed from Kayser et al. 2006 1 P* found)
New Zealand 0
Fiji 0
Solomon Islands0
French Polynesia 0
Vanuatu0
New Caledonia ?
Guam 0
Samoa0
Kiribati ?
Tonga 0
Micronesia FDR0
Marshall Islands0
American Samoa ?
Northern Mariana Islands ?
Palau ?
Cook Islands 0
Wallis and Futuna0
Tuvalu 0
Nauru ?
Norfolk Island ?
Niue 0 (small sample size)
Tokelau 0 (small sample size)
Hawaii 0 (small sample size from FTDNA)
Australia 0
Timor10.8
Aeta 28
Filipino Austronesian0
Malay 0
Flores 0
Sulawesi 0.6
East Indonesia 0
Java Indonesia 0
Bali Indonesia 0
Sumatra Indonesia 0
Borneo Indonesia 0
West Papua Province 0
Papua Province 0
Sumba Indonesia 03.2

P1 (K2b2a)

P1 (M45/PF5962), also known as K2b2a, is hundreds of times more common than P* (K2b2; PxM45), as it includes haplogroups Q and R, is estimated as being 14,300 years younger than K2b.[4]

Many ethnic groups with high frequencies of P1 are located in Central Asia and Siberia: 35.4% among Tuvans, 28.3% among Altaian Kizhi,[6] and 35% among Nivkh males.

Modern South Asian populations also feature P1 at low to moderate frequencies.[7] In South Asia it is most frequent among the Muslims of Manipur (33%), but this may be due to a very small sample size (nine individuals). Cases of P1 (M45) reported in South Asia may be unresolved cases or R2 or Q.[7]

Population group (with ethnolinguistic affiliation)PaperNPercentageSNPs Tested
Tuvinian (Turkic) Darenko 200511335.40P-M45
Nivkh (isolate) Lell 20011735P-M45
Altai-Kizhi (Altaians) (Turkic) Darenko 20059228.3P-M45
Todjin (Turkic) Darenko 20053622.2P-M45
Chukchi (Chukotkan) Lell 20012420.8P-M45
Koryak (Chukotkan) Lell 20012718.5P-M45
Yupik (Eskimo-Aleut) Lell 20013318.2P-M45
Uighur (Turkic) Xue 20067017.1P-M45
Kalmyk (Mongolic) Darenko 20056811.8P-M45
Turkmen (Turkic) Wells 20013010P-M45
Soyot (Turkic) Darenko 2005348.8P-M45
Uriankhai (Mongolic) Katoh 2004608.3P-M45
Khakas (Turkic) Darenko 2005537.6P-M45
Kazakh (Turkic) Wells 2001545.6P-M45
Uzbek (Turkic) Wells 20013665.5P-M45
Khasi-Khmuic (Austro-Asiatic)Reddy 20093535.40P-M45(xM173) §
Mundari (Austro-Asiatic)Reddy 20096410.90P-M45(xM173) §
Nicobarese (Mon-Khmer)Reddy 2009110.00P-M45(xM173) §
Southeast Asia (Austro-Asiatic) Reddy 20092571.60P-M45(xM173) §
Garo (Tibeto-Burman)Reddy 2009711.40P-M45(xM173) §
India (Tibeto-Burman)Reddy 20092263.10P-M45(xM173) §
East Asia (Tibeto-Burman)Reddy 20092140.00P-M45(xM173) §
Eastern India (Indo-European)Reddy 20095418.50P-M45(xM173) §
Iran (Southern Talysh) Nasidze 2009504.00P-M45(xM124,xM173)
Azerbaijan (Northern Talysh) Nasidze 2009405.00P-M45(xM124,xM173)
Mazandarani (Iranian) Nasidze 2009504.00P-M45(xM124,xM173)
Gilaki (Iranian) Nasidze 2009500.00P-M45(xM124,xM173)
Tehran (Iranian) Nasidze 2004804.00P-M45(xM124,xM173)
Isfahan (Iranian) Nasidze 2004506.00P-M45(xM124,xM173)
Bakhtiari (Iranian) Nasidze 2008532.00P-M45(xM124,xM173)
Iranian Arabs (Arabic)Nasidze 2008472.00P-M45(xM124,xM173)
North Iran (Iranian)Regueiro 2006339.00P-M45(xM124,xM173)
South Iran (Iranian) Regueiro 20061173.00P-M45(xM124,xM173)
South Caucacus (Georgian)Nasidze and Stoneking 2001773.00P-M45(xM124,xM173)
South Caucacus (Armenian)Nasidze and Stoneking 20011002.00P-M45(xM124,xM173)
Hvar (Croatian) Barać et al. 2003 14
Korčula (Croatian) Barać et al. 2003 6

§ These may include members of haplogroup R2.

Population group N P (xQ,xR) Q R Paper
Count % Count % Count %
Gope 16 1 6.4 Sahoo 2006
Oriya Brahmin 24 1 4.2 Sahoo 2006
Mahishya 17 3 17.6 Sahoo 2006
Bhumij 15 2 13.3 Sahoo 2006
Saora 13 3 23.1 Sahoo 2006
Nepali 7 2 28.6 Sahoo 2006
Muslims of Manipur 9 3 33.3 Sahoo 2006
Himachal Pradesh Rajput 15 1 6.7 Sahoo 2006
Lambadi 18 4 22.2 Sahoo 2006
Gujarati Patel 9 2 22.2 Sahoo 2006
Katkari 19 1 5.3 Sahoo 2006
Madia Gond 14 1 7.1 Sahoo 2006
Kamma Chowdary 15 0 0 1 6.7 12 80 Sahoo 2006

See also

[15] [16] [17] [18] [19] [20] [21] [22][23][24][25] Modern Populations+Ancient Basques

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References

  1. 1 2 3 4 5 Tatiana M. Karafet et all. Improved phylogenetic resolution and rapid diversification of Y-chromosome haplogroup K-M526 in Southeast Asia, 2014
  2. 1 2 3 http://www.phylotree.org/Y/tree/index.htm
  3. Karafat 2014
  4. 1 2 3 4 5 Karafet 2014
  5. 1 2 Nagle and colleagues assumed 56% of the samples taken to be non-indigenous. (Nagle, N. et al., 2015, "Antiquity and diversity of aboriginal Australian Y-chromosomes", American Journal of Physical Anthropology (epub ahead of print version; abstract).
  6. Miroslava Derenko et al 2005, Contrasting patterns of Y-chromosome variation in South Siberian populations from Baikal and Altai-Sayan regions
  7. 1 2 Sahoo, S. (2006). "A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios". Proceedings of the National Academy of Sciences. 103 (4): 843–8. doi:10.1073/pnas.0507714103. PMC 1347984Freely accessible. PMID 16415161.
  8. http://www.nature.com/ejhg/journal/vaop/ncurrent/full/ejhg2014106a.html
  9. http://www.nature.com/nature/journal/v505/n7481/full/nature12736.html?WT.ec_id=NATURE-20140102
  10. http://www.nature.com/nature/journal/v506/n7487/full/nature13025.html
  11. http://www.fsigenetics.com/article/S1872-4973(14)00116-1/abstract
  12. http://www.biomedcentral.com/content/pdf/1471-2148-9-181.pdf
  13. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0041252
  14. http://www.press.uchicago.edu/ucp/journals/journal/ca.html
  15. Haber, Marc; Platt, Daniel E.; Ashrafian Bonab, Maziar; Youhanna, Sonia C.; Soria-Hernanz, David F.; Martínez-Cruz, Begoña; Douaihy, Bouchra; Ghassibe-Sabbagh, Michella; Rafatpanah, Hoshang; Ghanbari, Mohsen; Whale, John; Balanovsky, Oleg; Wells, R. Spencer; Comas, David; Tyler-Smith, Chris; Zalloua, Pierre A. (2012). "Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events". PLoS ONE. 7 (3): e34288. Bibcode:2012PLoSO...734288H. doi:10.1371/journal.pone.0034288. PMC 3314501Freely accessible. PMID 22470552.
  16. Bekada, Asmahan; Fregel, Rosa; Cabrera, Vicente M.; Larruga, José M.; Pestano, José; Benhamamouch, Soraya; González, Ana M. (2013). "Introducing the Algerian Mitochondrial DNA and Y-Chromosome Profiles into the North African Landscape". PLoS ONE. 8 (2): e56775. Bibcode:2013PLoSO...856775B. doi:10.1371/journal.pone.0056775. PMC 3576335Freely accessible. PMID 23431392.
  17. Rosser, Z. H.; Zerjal, T; Hurles, M. E.; Adojaan, M; Alavantic, D; Amorim, A; Amos, W; Armenteros, M; Arroyo, E; Barbujani, G; Beckman, G; Beckman, L; Bertranpetit, J; Bosch, E; Bradley, D. G.; Brede, G; Cooper, G; Côrte-Real, H. B.; De Knijff, P; Decorte, R; Dubrova, Y. E.; Evgrafov, O; Gilissen, A; Glisic, S; Gölge, M; Hill, E. W.; Jeziorowska, A; Kalaydjieva, L; Kayser, M; et al. (December 2000). "Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language". The American Journal of Human Genetics. 67 (6): 1526–43. doi:10.1086/316890. PMC 1287948Freely accessible. PMID 11078479.
  18. Genetic Structure in Contemporary South Tyrolean Isolated Populations Revealed by Analysis of Y-Chromosome, mtDNA, and Alu Polymorphisms
  19. Y-chromosomal STR haplotypes in a population sample from continental Greece, and the islands of Crete and Chios
  20. http://www.krepublishers.com/06-Special%20Volume-Journal/T-Anth-00-Special%20Volumes/T-Anth-SI-03-Anth-Today-Web/Anth-SI-03-31-Trivedi-R/Anth-SI-03-31-Trivedi-R-Tt.pdf
  21. http://drum.lib.umd.edu/handle/1903/11443
  22. Sanchez, J.J.; Børsting, C.; Hernandez, A.; Mengel-Jørgensen, J.; Morling, N. (2004). "Y chromosome SNP haplogroups in Danes, Greenlanders and Somalis". International Congress Series. 1261: 347–349. doi:10.1016/S0531-5131(03)01635-2.
  23. Cruciani, F; Trombetta, B; Sellitto, D; Massaia, A; Destro-Bisol, G; Watson, E; Beraud Colomb, E; Dugoujon, J. M.; Moral, P; Scozzari, R (July 2010). "Human Y chromosome haplogroup R-V88: a paternal genetic record of early mid Holocene trans-Saharan connections and the spread of Chadic languages". European Journal of Human Genetics. 18 (7): 800–7. doi:10.1038/ejhg.2009.231. PMC 2987365Freely accessible. PMID 20051990.
  24. yhrd.org
  25. http://mbe.oxfordjournals.org/content/28/1/717.long
  26. http://biorxiv.org/content/early/2013/12/13/000802

Notes

[Assuming B70 ky for the TMRCA of M168 chromosomes,10 we estimate the interval of time between the diversification of K-M9 and that of K-P331 to be <3 ky. This rapid diversification has also been assessed using whole Y-chromosome sequence data.22 In addition, we estimate the total time between the common ancestor of K-M9 and that of P-P295 to be <5 ky, and the time between the common ancestor P-P295 and that of P-P27 to be 12.3 ky (95% CI: 6.6–20 ky).http://www.nature.com/ejhg/journal/vaop/ncurrent/full/ejhg2014106a.html]

Phylogenetic tree of human Y-chromosome DNA haplogroups [χ 1][χ 2]
"Y-chromosomal Adam"
A00 A0-T [χ 3]
A0 A1 [χ 4]
A1a A1b
A1b1 BT
B CT
DE CF
D E C F
F1  F2  F3  GHIJK
G HIJK
IJK H
IJ   K
I J    LT [χ 5]  K2
L T [χ 6] NO [χ 7] K2b [χ 8]     K2c  K2d  K2e [χ 9]
N   O   K2b1 [χ 10]     P
K2b1a[χ 11]     K2b1b K2b1c      M     P1 P2
K2b1a1   K2b1a2   K2b1a3 S [χ 12] Q   R
  1. Van Oven M, Van Geystelen A, Kayser M, Decorte R, Larmuseau HD (2014). "Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome". Human Mutation. 35 (2): 187–91. doi:10.1002/humu.22468. PMID 24166809.
  2. International Society of Genetic Genealogy (ISOGG; 2015), Y-DNA Haplogroup Tree 2015. (Access date: 1 February 2015.)
  3. Haplogroup A0-T is also known as A0'1'2'3'4.
  4. Haplogroup A1 is also known as A1'2'3'4.
  5. Haplogroup LT (L298/P326) is also known as Haplogroup K1.
  6. Between 2002 and 2008, Haplogroup T (M184) was known as "Haplogroup K2" – that name has since been re-assigned to K-M526, the sibling of Haplogroup LT.
  7. Haplogroup NO (M214) is also known as Haplogroup K2a (although the present Haplogroup K2e was also previously known as "K2a").
  8. Haplogroup K2b (M1221/P331/PF5911) is also known as Haplogroup MPS.
  9. Haplogroup K2e (K-M147) was previously known as "Haplogroup X" and "K2a" (but is a sibling subclade of the present K2a, also known as Haplogroup NO).
  10. Haplogroup K2b1 (P397/P399) is similar to the former Haplogroup MS, but has a broader and more complex internal structure.
  11. Haplogroup K2b1a has also been known as Haplogroup S-P405.
  12. Haplogroup S (S-M230), also known as K2b1a4, was previously known as Haplogroup K5.
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